Standardised Medical Survey

There are a few ongoing studies looking at pulling together information like that as part of research into prenatal causes of health and disease - ie. how your parents and grandparents lives could influence your health in later years. There's the Developmental Origins of Health and Disease Centre (DOHaD) in Southampton that was the first centre of it's kind, which builds on the Isle of Wight study which was a massive cohort study of general health of the population and follow up studies of their children and the Southampton Women's Survery which did the same thing in a different area. I know that Norway has a similar thing where they have pooled general health records with tax records and the census so they could look at the quality of life for correlations between that and health. There was also one done when the wall came down in Germany, to see what effect a Western and Eastern parental lifestyle had on the children which grew up in a unified German environment. Sorry I can't be more specific, and it might not even be what you're looking for, but it's another avenue to consider which may have the sort of data you're looking for.

I'm not really sure if it's what you're after, but there's the WHO's International Classification of Disease that you could maybe adapt into something workable?

Link

The next place I might rummage would be some public health papers and see what forms they used for data collection.