Indeed, some of the elements you listed are the same. (2 3 4) = (4 2 3) = (3 2 4) and (2 4 3) = (3 2 4) = (4 3 2). To see this, look at, say, (2 3 4). It takes 2 to 3, 3 to 4, and 4 to 2. Then observe that (3 4 2) and (4 2 3) do exactly the same thing. If you shift all the numbers in any cycle one place to the right, moving the right-most number to the left-most position, you will get the same cycle. The same applies for a left-shift.
It appears you are making the same mistake with the 4-cycles too. For example, (1 2 3 4) = (4 1 2 3) = (3 4 1 2) = (2 3 4 1). Hence if you write down the numbers 1-4 in an arbitrary order, there are three equivalent cycles due to the left or right-shifting I described above, which explains the
44!.
Another way of thinking about the (1,3) cycle type is as follows. There is one fixed number and a 3-cycle. In
S4 there are only four numbers you can fix. For the remaining three numbers, regardless of what they are, there are only two possible 3-cycles. That gives eight elements with cycle structure (1,3). For example, let's say you fix the number 1. Then you have elements of the form (1)(x y z) where
x,y,z∈{2,3,4}. The only two distinct possibilities are (2 3 4) and (2 4 3).