Reputation wise, I think employers will regard them equally, you might want to look at rankings for your course, although employers are a bit unlikely to do this.
You should look at others aspects of university life, not just its reputation. Have you looked at the courses, for example, these can differ quite a lot and will not only make a difference to how much you'll enjoy your studies but possibly how well you'll do, one may have a course that really captures your interest, another may have a lot of sections that you're not so keen on.
I'd also go and visit if you haven't done so, get a feel for the place and ask students about their experiences.