It's not just the overwhelming rejection of evidence either, it's that she then makes conclusions on the basis of that lack of evidence. For the sake of argument, let's assume Cass is right that the vast majority of existing evidence is too thin and unreliable to be included. If this is the case, she should struggle to make any reliable recommendations at all. But obviously, that's not what happened. Instead, she largely substitutes biased assumptions instead.
For instance, let's take the section on social transitioning. She characterises the dispute around this accordingly:
"There are different views on the benefits versus the harms of early social transition. Some consider that it may improve mental health and social and educational participation for children experiencing gender-related distress. Others consider that a child who might have desisted at puberty is more likely to have an altered trajectory, culminating in medical intervention which will have life-long implications." (Section 12.3)
The problem here is that, while she initially talks of benefits vs harms, if you have a neutral view of transition then she hasn't actually presented any views of
harms here. She's presented one line of argument that social transition is beneficial, and contrasted it against a line of argument that it is
unnecessary. But unnecessary is not the same as harmful. This framing only really makes sense if you assume a view of transition as a prima facie harm.
To implicitly justify her bias against social transition, Cass argues for classifying it as an "intervention":
"Social transition may not be thought of as an intervention or treatment, because it is not something that happens in a healthcare setting and it is within the agency of an adolescent to do for themselves. However, in an NHS setting it is important to view it as an active intervention because it may have significant effects on the child or young person in terms of their psychological functioning and longer-term outcomes." (Section 12.5)
This is begging the question - Cass is basing an argument on a point that she herself acknowledges is in dispute.
But for the sake of argument, let's take her word for it and assume it is an intervention. The bigger problem is what she contrasts it against, namely implicitly describing prevention of social transition as
"no intervention" (Sections 3.5 and 3.8).
It's really rather absurd to argue that parents allowing a child to dress and refer to themselves how they choose constitutes "active intervention" but psychologists actively coercively preventing them from doing this, against the child's will, constitutes "no intervention". The most generous interpretation of Cass here is that she's ignorant of what this kind of "non-intervention" treatment actually looks like in practice. For instance, let's take her main source for the argument that most gender-dysphoric children desist over the course of puberty: Kenneth Zucker (see Section 12.32). Zucker's goal was rather explicitly to prevent children from becoming trans,
and his prescription was for extreme levels of parental control and prohibition of their kids - taking and disposing of their toys, controlling what kinds and even what colour of clothes they could wear, preventing them from socialising with or seeing friends. Quite frankly, Zucker's "treatment" was simply abuse.