Well I agree would agree with you that theology as a discipline ought to die. Any historical aspect of it can be took up via religious studies. Of course a lot of modern religious studies is really theology and vice versa which is a different debate...
Theories of gravity, evolution, relativity and so on were not always the absolute consensus though. Similarly we didn't reject plato's theory of forms immediately upon seeing it because the methodology behind his reasoning was overtly flawed. Now everyone agrees they don't exist.
There are consensus's on meta-physical claims that do exist though, the biggest one would be electrons. To say that electrons exist is definitely a meta-physical claim since we don't ever observe an the entity of an electron. Electrons are posited entities the effects of which we observe and it from the effects that we derive a belief in electrons. We have no visual proof that those effects result in what we call electrons though; there could be a different particle causing them or something different altogether that we are just unaware of.
Similarly in mathematics there are multiple ways of formulating proofs because proofs are based on logics and logics, well, there are many different logics that all successfully predict phenomena in the exact same way. Look up the whole school of intuitionist mathematics. Heck, it's even possible to be a flat-earther (or more specifically a disc-earther) and you will get exactly the same predictions as you do with all the modern beliefs you have in contemporary natural science and meta-physics. My point is then that what seems to determine belief here is mental heuristics - what is the most useful kind of theory practically; what theory requires the belief in the least number of distinct entities; which theory best fits in with our incumbent theories etc. But heuristics have no bearing on truth, which really is why knowledge (taken to be defined as certainty about the truth of something) is impossible about any claim regarding the world. Science and meta-physics shouldn't aim for knowledge. They aim for identifying what beliefs we should have. Where what we should have is the most correct belief and the most correct belief is the one that is the most reliable with regards to predictions; the most practical and so on...
And the point of all that is to say that really scientific claims are not of a different sort of meta-physical claims rather they are just more likely to be true assuming good science was the basis of them and that's because there will always be more evidence to back them up - "objective evidence" gained from experiments and not just mathematical/logical predictions - mathematics and logic here failing to give us objective proofs because we have no way of identifying whether our axioms are true or not while science goes a bit further in that department.
That's great, but that doesn't make meta-physics useless as studying it nevertheless allows to have a more correct view about meta-physical claims and ultimately having beliefs that are more correct about meta-physics doesn't in any way prevent you from having correct beliefs about science, in fact, the correct belief about meta-physics necessarily must correlate with the correct beliefs about science because the two go completely hand in hand by justifying one another. Put it this way if a god was real then all secular theories of science would be incorrect. If a god was not real then all theological theories of science would be incorrect. If your science is incorrect then your meta-physics will be incorrect or ill-informed and vice versa. Of course the question of a god's reality is hardly an important meta-physical question these days as over 80% (at least) of scientists and meta-physicians would agree It doesn't exist but it was the best example I could think of at the time...