If you want high reputation in industry, then Bournemouth is probably number one. I managed to get 3 job offers upon graduating this summer (A Large Evil Corporation (Commercials company), Rare Microsoft games, and Double Negative (Visual effects for films) and i dont think my work is particularly good at all. The reputation and prestige that comes from graduating from bournemouth gave me (and many of my coursemates) that little bit extra above other graduates in securing the jobs we have all acheived. This is also due to the fact that many people in industry were themselves a graduate from Bournemouth. So they understand the course and know exactly what we learn. The techy and artistic skills learnt on my course is the perfect combination that many employers look for in graduates.
We are not one trick pony at all. Each of my job offers were completely different. My role at the commericals place would have been a generalist which is a bit of everything in CG, role at Rare was a technical artist, where i'd have to make tools for the artist to use as well as little arty jobs here and there.. then the job i've accepted at Double negative is a matchmover role. All skills learnt while at Bournemouth, and the jobs are completely different.
If you want to specialise in 2D animation, then the arts uni at Bournemouth would probably be a better choice for you over the 3D course at the main uni.
Hope that helps.