I think Ex Machina would apply to this, definitely one of my favourite recent movies. As someone said before, the Nolan movies are pretty clever (Inception, Interstellar).
Shutter Island, Looper, The Matrix, Memento, the list goes on, but I though Eternal Sunshine of the Spotless mind could qualify as 'clever', maybe not in the same league as some of the above mentioned movies, but it's up there.