During photosynthesis, the photosystems are photoionised (ionised by light) which can affect their mass, I'm not sure what the exact ionisation reaction is but it would change the mass of the photosystems depending on if they were ionised or not. You also might have some functioning structures like electron transport chains remaining in your chromatography paper - although there will obviously be very little energy generation, these could start reating molecules like water into hydrogen ions and oxygen, forming gases and affecting your chromatography.